我知道这个问题已经被问过很多次了,但我的情况非常特殊:我使用的Linux集群没有root用户,但只能使用“module load gcc”“module load mkl”“module loadR3.3/mkl”等命令来加载库。
最近,我尝试在该集群上的帐户上安装mxnet,之后一切似乎都正常,但后来我使用“模块负载R3.3/mkl”而不是“模块加载R3.2/mkl)从R3.2切换到R3.2,但现在当我尝试加载像stringi这样的R包时,它说
文库(stringi),
动态加载中出错(文件,DLLpath=DLLpath,…):
无法加载共享对象'/home/hpc/pr74ze/ru37wof2/R/x86_64-pc-linux-gnu-library/3.3/strinni/libs/x
86_64/stringi.so':
/usr/lib64/libstdc++.so.6:找不到版本“CXXABI_1.3.8”(/home/hpc/pr74ze/ru37wof2/R/x86需要
_64台linux gnu库/3.3/stringi/libs/x86_64/stringi.so)
错误:stringi的包或命名空间加载失败
我记得我以前试过加载gsl
module list
Currently Loaded Modulefiles:
1) admin/1.0 3) intel/16.0 5) mpi.intel/5.1 7) R/3.3mkl 9) git/latest 11) gsl/1.16
2) tempdir/1.0 4) mkl/11.3 6) lrz/default 8) nano/2.2 10) gcc/4.9
如果我运行以下
echo $LD_LIBRARY_PATH
/usr/lib64:/lrz/mnt/sys.x86_64/compilers/java/jdk1.7.0_51/jre/lib/amd64/server:/usr/lib64:/lrz/mnt/sys.x86
_64/compilers/java/jdk1.7.0_51/jre/lib/amd64/server:/lrz/sys/libraries/gsl/1.16/lib:/lrz/sys/compilers/gcc
/4.9.3/lib64:/lrz/sys/compilers/gcc/4.9.3/lib:/lrz/sys/applications/R/3.3.1_MKL/lib64/R/lib/x86_64:/lrz/sy
s/intel/impi/5.1.3.181/lib64:/lrz/sys/intel/studio2016_u4/compilers_and_libraries_2016.4.258/linux/mkl/lib
/intel64:/lrz/sys/intel/studio2016_u4/debugger_2016/libipt/intel64/lib:/lrz/sys/intel/studio2016_u4/compil
ers_and_libraries_2016.4.258/linux/compiler/lib/intel64
如果我尝试安装RcppZiggurat
* installing *source* package âRcppZigguratâ ...
** package âRcppZigguratâ successfully unpacked and MD5 sums checked
** libs
*** arch - x86_64
icpc -I/lrz/sys/applications/R/3.3.1_MKL/lib64/R/include -I/lrz/sys/applications/R/3.3.1_MKL/lib64/R/include/x86_64 -DNDEBUG -I. -I../inst/include -I/usr/local/include -I"/home/hpc/pr74ze/ru37wof2/R/x86_64-pc-lin
ux-gnu-library/3.3/Rcpp/include" -I"/home/hpc/pr74ze/ru37wof2/R/x86_64-pc-linux-gnu-library/3.3/RcppGSL/include" -fpic -O3 -c RcppExports.cpp -o RcppExports.o
In file included from /home/hpc/pr74ze/ru37wof2/R/x86_64-pc-linux-gnu-library/3.3/RcppGSL/include/RcppGSL.h(25),
from RcppExports.cpp(4):
/home/hpc/pr74ze/ru37wof2/R/x86_64-pc-linux-gnu-library/3.3/RcppGSL/include/RcppGSLForward.h(26): catastrophic error: cannot open source file "gsl/gsl_vector.h"
#include <gsl/gsl_vector.h>
^
compilation aborted for RcppExports.cpp (code 4)
但是,我应该如何着手找出问题所在呢?